Unsoed has 12 (twelve) faculties that organize monodisciplinary programs at the academic and professional education levels and one multidisciplinary postgraduate program at the academic education level. The twelve faculties consist of:
- Faculty of Agriculture
- Faculty of Biology
- Faculty of Economics & Business
- Faculty of Animal Husbandry
- Faculty of Law
- Faculty of Social & Political Sciences
- Faculty of Medicine
- Faculty of Engineering
- Faculty of Health Sciences
- Faculty of Humanities
- Faculty of Mathematics & Natural Sciences
- Faculty of Fisheries and Marine Science
Meanwhile, the Postgraduate Program provides multidisciplinary education, namely Environmental Science, Agricultural Extension, Agricultural Biotechnology and Agribusiness.